RSAT - convert-matrix

Convert different types of position-specific scoring matrices (PSSM), and calculate statistical parameters.


Matrix (or matrices)        Format 

Or select a file to upload


Pseudo-counts distributed in an equiprobable waydistributed proportionally to residues priors

Background model estimation method

    Organism-specific

      Organism  not seeing your favorite organism in the list ? Contact us to have it installed
      Sequence type  

    Estimate from input matrix
    Upload your own background file     
        Format 

Pseudo-frequencies
Note: Only Bernoulli models are supported. Higher-order Markov models are converted into Markov 0 (Bernoulli).



Output format 

Output fields 
 counts
 frequencies
 weights
 info
 header
 margins
 consensus
 parameters
 profile
 comments
 logo (using Weblogo)    (options:      )

score decimals
Compute reverse complement
Multiply counts (convert frequency matrices into count matrices)
Insert columns           Left side          Right side

Permutations For random controls. Note: this option only returns 'counts'.

Output 

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