RSAT - matrix-clustering

Identify groups (clusters) of similarities between a set of motifs and align them.


Conceptionc, implementationi and testingt : Jaime Castro-Mondragoncit , Morgane Thomas-Cholliert , Jacques van Heldencit


Analysis Title


Add up to three collections of PSSMs


Motif Collection Name

Input matrices        Format 

Or select a file to upload


Motif Collection 2 Name

Input matrices 2        Format 

Or select a file to upload


Motif Collection 3 Name

Input matrices 3        Format 

Or select a file to upload


Motif comparison options

 Motif comparison with compare-matrices-quick (100 times faster). Only for Ncor and Cor.


Clustering options

Metric to build the trees  

Aglomeration rule  

Merge matrices  

Output file options

 Heatmap

 Export the trees in Newick format.

 Radial Tree (motif browser)

 Negative control: the input motifs columns are randomly permuted.


Output 

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