RSAT - matrix-clustering

Identify groups (clusters) of similarities between a set of motifs and align them.


Conceptionc, implementationi and testingt : Jaime Castro-Mondragoncit , Morgane Thomas-Cholliert , Jacques van Heldencit


Analysis Title


Add one or two collections of PSSMs


Input matrices        Format 

Or select a file to upload

Motif Collection Name


Input matrices 2        Format 

Or select a file to upload

Motif Collection 2 Name


Input matrices 3        Format 

Or select a file to upload

Motif Collection 3 Name


Motif comparison options

 Motif comparison with compare-matrices-quick (100 times faster). Only for Ncor and Cor.


Clustering options

Metric to build the trees  

Aglomeration rule  

Merge matrices  

Output file options

 Heatmap

 Export the trees in Newick format.

 Negative control: the input motifs columns are randomly permuted.


Labels displayed in the logo tree

 Motif ID

 Motif name

 Consensus

Output 

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