RSAT - oligo-diff

Compare oligonucleotide occurrences between two input sequence files, and return oligos that are significantly enriched in one of the files respective to the other one.

Program developed by Jacques van Helden


Input sequences

Test sequence set
Paste your sequence in fasta format in the box below

Upload file   

Control sequence set
Paste your sequence in fasta format in the box below

Upload file   

 purge sequences (highly recommended)

Oligonucleotide countint options

Oligomer length        prevent overlapping matches
Count on 

Thresholds

Fields Lower
Threshold
Upper
Threshold
Occurrences
Significance
P-value
E-value
 Convert assembled patterns to matrices.
            Max matrices    Min site weight    Flanking residues
Output 
      MANUAL MAIL