RSAT server retrieve sequence

Starting from a list of genes, returns upstream, downstream or ORF sequences. Dedicated to genomes locally-installed in RSAT.
To retrieve sequences from an organism that is in the EnsEMBL database, we recommend to use the retrieve-ensembl-seq program instead.
Jacques van Helden.
Sample output
User Manual
Tutorial
Ask a question to the RSAT team
Cite the publication:
Medina-Rivera A*, Defrance M*, Sand O*, Herrmann C, Castro-Mondragon J, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier - Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M., van Helden J. "RSAT 2015 : Regulatory Sequence Analysis Tools", Nucleic Acid Research 43(W1):W50-W56 (2015) [Pubmed][Full text]
van Helden, J., Andre, B. & Collado-Vides, J. (2000). A web site for the computational analysis of yeast regulatory sequences. Yeast 16(2), 177-187. [Pubmed 10641039]
Organism
Single organism Info

    
Organism 
[List of organisms] not seeing your favorite organism in the list ? Contact us to have it installed


Multiple organisms (2-column input, check help for format)

Gene
all genes of this organism
genes specified below Info


Upload gene list from file
Mandatory options

Sequence type

Info           From    To 
Advanced options

Query contains only IDs (no synonyms) Info

Reference feature type (reference coordinate for positions) Info


 Prevent overlap with neighbour genes (noorf) Info

 Mask repeats (only valid for organisms with annotated repeats) Info
Output options
Sequence format  Info
Sequence label  Info

Output