RSAT - seq-proba

Calculate the probability of a sequence, given a background model.
Bernoulli or Markov models are supported.
Sequences must be composed of A,C,G,T (IUPAC code for ambiguous nucleotides is not supported)


Sequence       Format Paste your sequence in the box below

Or select a file to upload (.gz compressed files supported)


Mask 

Background model

RSAT pre-calculated background models
    Markov order  

    Organism-specific

      Organism  not seeing your favorite organism in the list ? Contact us to have it installed
      Sequence type  

    Count on
      prevent overlapping matches (noov)

Custom background model

    Upload your own background file     
        Format 

Pseudo-frequencies


Return fields 
 id    proba_b    log_proba    len    seq    detail  


Output 
      MANUAL MAIL